PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000513G0590
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family LBD
Protein Properties Length: 310aa    MW: 33145 Da    PI: 5.151
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000513G0590genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.74.3e-294106198
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C+++C+++p++     p++q++++ +++k++G++ +l+ll+  p++ r+++++sl+yeA+ r+ +P+y++vg+++++q+q +q
  PH01000513G0590   4 SCNGCRVLRKGCSEGCTIRPCLqwiktPDAQANATVFLAKFYGRAGLLNLLAGPPDHLRPAVFRSLLYEACGRIVNPIYSSVGLLWSGQWQACQ 97 
                      6****************************************************99*************************************** PP

           DUF260  90 lkaelallk 98 
                      +++e++l +
  PH01000513G0590  98 AAVEAVLKG 106
                      ***998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.1143109IPR004883Lateral organ boundaries, LOB
PfamPF031953.5E-234102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEGCT IRPCLQWIKT PDAQANATVF LAKFYGRAGL LNLLAGPPDH  60
LRPAVFRSLL YEACGRIVNP IYSSVGLLWS GQWQACQAAV EAVLKGDRIV QVSSEAAAAA  120
QATPPLRAYD IRHVAKDPDA AAAADLLRVA RGGRTRFKRA SSSTSKPKGA GAKRASPTPR  180
QESEPEPEPV VVGEHDDDHD RARSHEESAG SHDHGHVVDD DMEVEEAREE GSEDTEVEAG  240
SHVSQAEQSP GPVAEEEEGE DEVGLELTLG LEPVTRVSRP ARPAAKAPCD LSAESSHIGL  300
RLELPACPSL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0954390.0FP095439.1 Phyllostachys edulis cDNA clone: bphylf039l14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577486.11e-141PREDICTED: LOB domain-containing protein 42-like
SwissprotQ9M8862e-82LBD41_ARATH; LOB domain-containing protein 41
TrEMBLI1IL921e-142I1IL92_BRADI; Uncharacterized protein
STRINGBRADI4G16740.11e-142(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-71LOB domain-containing protein 41